Index

_

__call__() (src.neurodags.features.DerivativeEntry method) __commit_id__ (in module src.neurodags._version) __repr__() (src.neurodags.features.DerivativeEntry method) __version__ (in module src.neurodags) (in module src.neurodags._version) __version_tuple__ (in module src.neurodags._version) _artifact_candidates_for() (in module src.neurodags.dag) _BaseSafeLoader (in module src.neurodags.loaders) _build_metadata() (in module src.neurodags.nodes.descriptive) _build_reference_base() (in module src.neurodags.orchestrators) _coerce_level() (in module src.neurodags.loggers) _collect_id_refs() (in module src.neurodags.dag) _CONFIGURED (in module src.neurodags.loggers) _FileJob (class in src.neurodags.orchestrators) _FileResult (class in src.neurodags.orchestrators) _flatten_dataarray_payload() (in module src.neurodags.dag) _FlattenedArtifactColumns (class in src.neurodags.dag) _format_coord_value() (in module src.neurodags.dag) _format_meas_date() (in module src.neurodags.nodes.descriptive) _ID_REF (in module src.neurodags.dag)

_is_id_ref() (in module src.neurodags.dag) _is_step_cached() (in module src.neurodags.dag) _json_safe() (in module src.neurodags.writers) _load_from_path() (in module src.neurodags.dag) _LOADED_SOURCES (in module src.neurodags.nodes.loader) _MissingPrecomputedArtifacts _ndindex() (in module src.neurodags.dag) _ndindex_fallback() (in module src.neurodags.dag) _prep_kwargs() (in module src.neurodags.dag) _process_file_job() (in module src.neurodags.orchestrators) _resolve_derivative_artifacts() (in module src.neurodags.dag) _resolve_eval_strings() (in module src.neurodags.utils) _resolve_psd_dataarray() (in module src.neurodags.nodes.spectral) _resolve_reference_base() (in module src.neurodags.orchestrators) _resolve_refs() (in module src.neurodags.dag) _simplify_artifact_payload() (in module src.neurodags.dag) _simplify_value() (in module src.neurodags.dag) _split_derivative_ref() (in module src.neurodags.dag) _topo_order() (in module src.neurodags.dag) _unique_module_name() (in module src.neurodags.nodes.loader) _unwrap_for_arg() (in module src.neurodags.dag)

A

add() (in module src.neurodags.example) aggregate_across_dimension() (in module src.neurodags.nodes.operations) analyze_bids_filename() (in module src.neurodags.utils) app (in module src.neurodags.visualization)

apply_1d() (in module src.neurodags.nodes.factories) apply_transform() (in module src.neurodags.visualization) Artifact (class in src.neurodags.definitions) artifacts (src.neurodags.definitions.NodeResult attribute)

B

band_ratios() (in module src.neurodags.nodes.spectral) bandpower() (in module src.neurodags.nodes.spectral)

basic_preprocessing() (in module src.neurodags.nodes.preprocessing) binarize_with_median() (in module src.neurodags.nodes.operations) build_derivative_dataframe() (in module src.neurodags.orchestrators)

C

clear_derivative_registry() (in module src.neurodags.features) clear_node_registry() (in module src.neurodags.nodes) collect_derivative_for_dataframe() (in module src.neurodags.dag) commit_id (in module src.neurodags._version)

common_root (src.neurodags.orchestrators._FileJob attribute) configure_logging() (in module src.neurodags.loggers) construct_mapping() (src.neurodags.loaders.UniqueKeySafeLoader method) coords (in module src.neurodags.visualization) custom_node_paths (src.neurodags.orchestrators._FileJob attribute)

D

data (in module src.neurodags.nodes.operations) dataset (src.neurodags.orchestrators._FileJob attribute) (src.neurodags.orchestrators._FileResult attribute) dataset_config (src.neurodags.orchestrators._FileJob attribute) DatasetConfig (class in src.neurodags.definitions) DatasetConfig.Config (class in src.neurodags.definitions) DEFAULT_BANDS (in module src.neurodags.nodes.spectral) definition (src.neurodags.features.DerivativeEntry attribute) derivative_definition (src.neurodags.orchestrators._FileJob attribute) derivative_label (src.neurodags.orchestrators._FileJob attribute) (src.neurodags.orchestrators._FileResult attribute)

derivative_name (src.neurodags.orchestrators._FileJob attribute) DerivativeEntry (class in src.neurodags.features) derivatives_path (src.neurodags.definitions.DatasetConfig attribute) dims (in module src.neurodags.visualization) discover() (in module src.neurodags.nodes) dry_run (src.neurodags.orchestrators._FileJob attribute) dry_run_payload (src.neurodags.orchestrators._FileResult attribute) ds (in module src.neurodags.visualization) dummy() (in module src.neurodags.nodes.dummy)

E

error_message (src.neurodags.orchestrators._FileResult attribute) error_type (src.neurodags.orchestrators._FileResult attribute) exclude_pattern (src.neurodags.definitions.DatasetConfig attribute)

extra (src.neurodags.definitions.DatasetConfig.Config attribute) extract_data_var() (in module src.neurodags.nodes.operations) extract_meeg_metadata() (in module src.neurodags.nodes.descriptive)

F

file_path (src.neurodags.orchestrators._FileJob attribute) (src.neurodags.orchestrators._FileResult attribute) file_pattern (src.neurodags.definitions.DatasetConfig attribute) filename (in module src.neurodags.visualization)

find_unique_root() (in module src.neurodags.utils) fooof() (in module src.neurodags.nodes.spectral) fooof_component() (in module src.neurodags.nodes.spectral) fooof_scalars() (in module src.neurodags.nodes.spectral) func (src.neurodags.features.DerivativeEntry attribute)

G

generate_1_over_f_noise() (in module src.neurodags.datasets) generate_dummy_dataset() (in module src.neurodags.datasets) get_all_files_across_datasets() (in module src.neurodags.iterators) get_all_files_from_pipeline_configuration() (in module src.neurodags.iterators) get_datasets_and_mount_point_from_pipeline_configuration() (in module src.neurodags.datasets) get_derivative() (in module src.neurodags.features)

get_dummy_epochs() (in module src.neurodags.datasets) get_dummy_raw() (in module src.neurodags.datasets) get_files_from_pattern() (in module src.neurodags.iterators) get_logger() (in module src.neurodags.loggers) get_node() (in module src.neurodags.nodes) get_num_digits() (in module src.neurodags.utils) get_path() (in module src.neurodags.utils)

I

index (src.neurodags.orchestrators._FileJob attribute) (src.neurodags.orchestrators._FileResult attribute) is_node (src.neurodags.orchestrators._FileJob attribute)

item (src.neurodags.definitions.Artifact attribute) iter_derivatives() (in module src.neurodags.features) iter_nodes() (in module src.neurodags.nodes) iterate_derivative_pipeline() (in module src.neurodags.orchestrators)

K

keep_channels() (in module src.neurodags.nodes.preprocessing)

L

list_derivatives() (in module src.neurodags.features) list_nodes() (in module src.neurodags.nodes) load_configuration() (in module src.neurodags.loaders) load_meeg() (in module src.neurodags.loaders) load_node_definitions() (in module src.neurodags.nodes.loader) log (in module src.neurodags.dag) (in module src.neurodags.features.pipeline) (in module src.neurodags.iterators) (in module src.neurodags.loaders) (in module src.neurodags.nodes.descriptive) (in module src.neurodags.nodes.loader) (in module src.neurodags.nodes.operations) (in module src.neurodags.nodes.preprocessing) (in module src.neurodags.nodes.spectral) (in module src.neurodags.orchestrators) (in module src.neurodags.utils) (in module src.neurodags.writers)

M

make_dropdown() (in module src.neurodags.visualization) make_dummy_dataset() (in module src.neurodags.datasets) mean_across_dimension() (in module src.neurodags.nodes.operations) meeg (in module src.neurodags.visualization) meeg_to_xarray() (in module src.neurodags.nodes.descriptive) mne_spectrum() (in module src.neurodags.nodes.spectral) mne_spectrum_array() (in module src.neurodags.nodes.spectral) module src.neurodags src.neurodags._version src.neurodags.dag src.neurodags.datasets src.neurodags.definitions src.neurodags.example src.neurodags.features src.neurodags.features.pipeline src.neurodags.iterators src.neurodags.loaders src.neurodags.loggers src.neurodags.nodes src.neurodags.nodes.antropy src.neurodags.nodes.descriptive src.neurodags.nodes.dummy src.neurodags.nodes.factories src.neurodags.nodes.loader src.neurodags.nodes.neurokit src.neurodags.nodes.operations src.neurodags.nodes.preprocessing src.neurodags.nodes.spectral src.neurodags.orchestrators src.neurodags.utils src.neurodags.visualization src.neurodags.writers

mount_point (src.neurodags.orchestrators._FileJob attribute)

N

name (src.neurodags.definitions.DatasetConfig attribute) (src.neurodags.features.DerivativeEntry attribute)

node_name (src.neurodags.orchestrators._FileJob attribute) NodeResult (class in src.neurodags.definitions) np (in module src.neurodags.dag)

P

parser (in module src.neurodags.orchestrators)

PathLike (in module src.neurodags.definitions) (in module src.neurodags.loaders)

R

register_derivative() (in module src.neurodags.features) register_derivative_with_name() (in module src.neurodags.features) register_derivatives_from_dict() (in module src.neurodags.features.pipeline) register_derivatives_from_yaml() (in module src.neurodags.dag) register_node() (in module src.neurodags.nodes)

register_node_with_name() (in module src.neurodags.nodes) replace_bids_suffix() (in module src.neurodags.utils) replace_brainvision_filename() (in module src.neurodags.datasets) RulesLike (in module src.neurodags.definitions) run_derivative() (in module src.neurodags.dag)

S

safe_sel() (in module src.neurodags.visualization) save_dict_to_json() (in module src.neurodags.writers) save_dummy_vhdr() (in module src.neurodags.datasets) skip (src.neurodags.definitions.DatasetConfig attribute) slice_xarray() (in module src.neurodags.nodes.operations) snake_to_camel() (in module src.neurodags.utils) src.neurodags module src.neurodags._version module src.neurodags.dag module src.neurodags.datasets module src.neurodags.definitions module src.neurodags.example module src.neurodags.features module src.neurodags.features.pipeline module src.neurodags.iterators module src.neurodags.loaders module src.neurodags.loggers module src.neurodags.nodes module

src.neurodags.nodes.antropy module src.neurodags.nodes.descriptive module src.neurodags.nodes.dummy module src.neurodags.nodes.factories module src.neurodags.nodes.loader module src.neurodags.nodes.neurokit module src.neurodags.nodes.operations module src.neurodags.nodes.preprocessing module src.neurodags.nodes.spectral module src.neurodags.orchestrators module src.neurodags.utils module src.neurodags.visualization module src.neurodags.writers module stage (src.neurodags.orchestrators._FileResult attribute) success (src.neurodags.orchestrators._FileResult attribute)

T

this_file (in module src.neurodags.features.pipeline)

this_yaml (in module src.neurodags.features.pipeline) traceback (src.neurodags.orchestrators._FileResult attribute)

U

UniqueKeySafeLoader (class in src.neurodags.loaders) unregister_derivative() (in module src.neurodags.features)

unregister_node() (in module src.neurodags.nodes) update_plot() (in module src.neurodags.visualization)

V

value_dropdowns (in module src.neurodags.visualization)

version (in module src.neurodags._version) version_tuple (in module src.neurodags._version)

W

writer (src.neurodags.definitions.Artifact attribute)

X

xarray_factory() (in module src.neurodags.nodes.factories)

xr (in module src.neurodags.dag) (in module src.neurodags.writers)

Y

yaml_definitions (in module src.neurodags.features.pipeline)