Usage

• neurodags validate pipeline.yml — load config and print dataset / derivative summary

• neurodags run pipeline.yml --derivative MyDerivative — execute one derivative

• neurodags dry-run pipeline.yml --derivative MyDerivative — inspect the execution plan

• neurodags dataframe pipeline.yml --format wide — assemble dataframe output

• neurodags dag pipeline.yml --html pipeline_dag.html — export Mermaid DAG HTML

• neurodags view path/to/file.nc — launch the Dash explorer

• neurodags tui pipeline.yml — launch the Textual TUI (neurodags[tui] extra required)

• Quickstart — a minimal working example

• Terminal User Interface (TUI) — manage and run pipelines from the terminal

• pipeline.yml Reference — all pipeline.yml keys and derivative flags

• datasets.yml Reference — all datasets.yml fields and mount points

• Custom Nodes — write and register custom nodes

• Dataframe Assembly — build ML-ready dataframes from derivatives

• Inspection and Visualization — dry-run, error markers, DAG visualization, file explorer

• Parallelism and Execution Control — local n_jobs, subset execution, error handling, HPC pointer